mappingmicroarrayprobestotheratgenomeviaapersistentindex
Class MismatchGen3
java.lang.Object
mappingmicroarrayprobestotheratgenomeviaapersistentindex.MismatchGen3
public class MismatchGen3
- extends java.lang.Object
Field Summary |
(package private) static int |
alph
|
(package private) static int[] |
alphCode
|
(package private) static long[][] |
calcValues
|
(package private) static int[] |
charID
|
(package private) static int[] |
power
|
(package private) static int[] |
revCharID
|
(package private) static int[] |
revComp
|
(package private) static int[][] |
substitute
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
alphCode
static int[] alphCode
substitute
static int[][] substitute
revComp
static int[] revComp
calcValues
static long[][] calcValues
charID
static int[] charID
revCharID
static int[] revCharID
power
static int[] power
alph
static int alph
MismatchGen3
public MismatchGen3()
main
public static void main(java.lang.String[] arg)
generateAndRevCompFromCode
public static oracle.sql.ARRAY generateAndRevCompFromCode(long startCode)
generateAndRevCompOneMismatchFromCode
public static oracle.sql.ARRAY generateAndRevCompOneMismatchFromCode(long startCode)
exactAndRevSixteen
public static oracle.sql.ARRAY exactAndRevSixteen(java.lang.String sequence)