mappingmicroarrayprobestotheratgenomeviaapersistentindex
Class MismatchGen3

java.lang.Object
  extended by mappingmicroarrayprobestotheratgenomeviaapersistentindex.MismatchGen3

public class MismatchGen3
extends java.lang.Object


Field Summary
(package private) static int alph
           
(package private) static int[] alphCode
           
(package private) static long[][] calcValues
           
(package private) static int[] charID
           
(package private) static int[] power
           
(package private) static int[] revCharID
           
(package private) static int[] revComp
           
(package private) static int[][] substitute
           
 
Constructor Summary
MismatchGen3()
           
 
Method Summary
static oracle.sql.ARRAY exactAndRevSixteen(java.lang.String sequence)
           
static oracle.sql.ARRAY generateAndRevCompFromCode(long startCode)
           
static oracle.sql.ARRAY generateAndRevCompOneMismatchFromCode(long startCode)
           
static void main(java.lang.String[] arg)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

alphCode

static int[] alphCode

substitute

static int[][] substitute

revComp

static int[] revComp

calcValues

static long[][] calcValues

charID

static int[] charID

revCharID

static int[] revCharID

power

static int[] power

alph

static int alph
Constructor Detail

MismatchGen3

public MismatchGen3()
Method Detail

main

public static void main(java.lang.String[] arg)

generateAndRevCompFromCode

public static oracle.sql.ARRAY generateAndRevCompFromCode(long startCode)

generateAndRevCompOneMismatchFromCode

public static oracle.sql.ARRAY generateAndRevCompOneMismatchFromCode(long startCode)

exactAndRevSixteen

public static oracle.sql.ARRAY exactAndRevSixteen(java.lang.String sequence)