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java.lang.Objectmappingmicroarrayprobestotheratgenomeviaapersistentindex.XMLParser
public class XMLParser
This class allows the XML configuration files used by the software to be read
Field Summary | |
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private org.w3c.dom.Document |
doc
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Constructor Summary | |
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XMLParser(java.lang.String fileName)
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Method Summary | |
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private java.util.List<java.lang.String> |
get16exSearchQueries()
Gets the queries for the 16ex search |
private java.util.List<java.lang.String> |
get19exSearchQueries()
Gets the queries for the 19ex search |
private java.util.List<java.lang.String> |
get19k1SearchQueries()
Gets the queries for the 19k1 search |
private java.util.List<java.lang.String> |
get19k3SearchQueries()
Gets the queries for the 19k3 search |
private java.util.List<java.lang.String> |
getBuildIndexQueries()
Gets the queries used to build the index |
java.lang.String[] |
getConfigurationDetails()
Gets the configuration details - database name, username and password - from the configuration file |
java.util.List<java.lang.String> |
getQueries(java.lang.String whatQueries)
Gets the queries from the configuration file |
private java.util.List<java.lang.String> |
getStoreProbesQueries()
Gets the queries used to store the probes |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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private org.w3c.dom.Document doc
Constructor Detail |
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public XMLParser(java.lang.String fileName)
Method Detail |
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public java.lang.String[] getConfigurationDetails()
public java.util.List<java.lang.String> getQueries(java.lang.String whatQueries)
whatQueries
- specifies what queries to get
private java.util.List<java.lang.String> getBuildIndexQueries()
private java.util.List<java.lang.String> getStoreProbesQueries()
private java.util.List<java.lang.String> get19exSearchQueries()
private java.util.List<java.lang.String> get19k1SearchQueries()
private java.util.List<java.lang.String> get19k3SearchQueries()
private java.util.List<java.lang.String> get16exSearchQueries()
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