|
||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.ObjectFrameView
mappingmicroarrayprobestotheratgenomeviaapersistentindex.MappingMicroarrayProbestotheRatGenomeviaaPersistentIndexView
public class MappingMicroarrayProbestotheRatGenomeviaaPersistentIndexView
This class creates the interface for the software
Field Summary | |
---|---|
private javax.swing.JDialog |
aboutBox
|
private javax.swing.JButton |
buildIndexButton
|
private javax.swing.JPanel |
buildIndexPanel
|
private int |
busyIconIndex
|
private javax.swing.Icon[] |
busyIcons
|
private javax.swing.Timer |
busyIconTimer
|
private javax.swing.ButtonGroup |
buttonGroup1
|
private javax.swing.ButtonGroup |
buttonGroup2
|
private javax.swing.ButtonGroup |
buttonGroup3
|
private javax.swing.JButton |
chromosomeControlDATFilesDestinationBrowseButton
|
private javax.swing.JLabel |
chromosomesControlDATFilesDestinationLabel
|
private javax.swing.JTextField |
chromosomesControlDATFilesDestinationTextField
|
private javax.swing.JButton |
chromosomesLocationBrowseButton
|
private javax.swing.JLabel |
chromosomesLocationLabel
|
private javax.swing.JTextField |
chromosomesLocationTextField
|
private java.sql.Connection |
conn
|
private java.lang.String |
dbName
|
private java.lang.String |
genome
|
private javax.swing.Icon |
idleIcon
|
private javax.swing.JTextArea |
indexProgressInformationTextArea
|
private javax.swing.JLabel |
indexProgressLabel
|
private javax.swing.JLabel |
indexTimingLabel
|
private javax.swing.JLabel |
jLabel1
|
private javax.swing.JScrollPane |
jScrollPane1
|
private javax.swing.JScrollPane |
jScrollPane2
|
private javax.swing.JScrollPane |
jScrollPane3
|
private javax.swing.JTabbedPane |
jTabbedPane1
|
private javax.swing.JTabbedPane |
jTabbedPane2
|
private javax.swing.JButton |
locationOfProbesBrowseButton
|
private javax.swing.JPanel |
mainPanel
|
private javax.swing.JMenuBar |
menuBar
|
private javax.swing.Timer |
messageTimer
|
private javax.swing.JRadioButton |
nineteenExRadioButton
|
private javax.swing.JRadioButton |
nineteenK1RadioButton
|
private javax.swing.JRadioButton |
nineteenK3RadioButton
|
private XMLParser |
parser
|
private java.lang.String |
password
|
private javax.swing.JButton |
probesControlDATFilesDestinationBrowseButton
|
private javax.swing.JLabel |
probesControlDATFilesDestinationLabel
|
private javax.swing.JTextField |
probesControlDATFilesDestinationTextField
|
private javax.swing.JLabel |
probesLocationLabel
|
private javax.swing.JTextField |
probesLocationTextField
|
private javax.swing.JTextArea |
probesProgressInformationTextArea
|
private javax.swing.JLabel |
probesProgressLabel
|
private javax.swing.JProgressBar |
progressBar
|
private javax.swing.JPanel |
runSearchesPanel
|
private javax.swing.JButton |
searchButton
|
private javax.swing.JLabel |
searchesAvailableLabel
|
private javax.swing.JTextArea |
searchProgressInformationTextArea
|
private javax.swing.JLabel |
searchProgressLabel
|
private javax.swing.JRadioButton |
sixteenExRadioButton
|
private javax.swing.JLabel |
statusAnimationLabel
|
private javax.swing.JLabel |
statusMessageLabel
|
private javax.swing.JPanel |
statusPanel
|
private javax.swing.JButton |
storeProbesButton
|
private javax.swing.JPanel |
storeProbesPanel
|
private javax.swing.JTabbedPane |
tabs
|
private java.lang.String |
url
|
private java.lang.String |
username
|
Constructor Summary | |
---|---|
MappingMicroarrayProbestotheRatGenomeviaaPersistentIndexView(SingleFrameApplication app)
|
Method Summary | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
private void |
buildIndexButtonActionPerformed(java.awt.event.ActionEvent evt)
Performs the action when the build index buttion is pressed |
||||||||||||||||||
private void |
chromosomeControlDATFilesDestinationBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
Performs the action when the chromosomes control and dat files location browse buttion is pressed |
||||||||||||||||||
private void |
chromosomesLocationBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
Performs the action when the chromosomes location browse buttion is pressed |
||||||||||||||||||
private void |
createGeneratedVariantsTable(java.lang.String query)
Creates the GeneratedVariants table in the database |
||||||||||||||||||
private void |
initComponents()
This method is called from within the constructor to initialize the form. |
||||||||||||||||||
static boolean |
isCtlFile(java.io.File f)
Checks to see if file f is a ctl file |
||||||||||||||||||
private void |
loadJavaFunctions()
Loads the required Java functions into the database |
||||||||||||||||||
private void |
locationOfProbesBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
Performs the action when the probes location browse buttion is pressed |
||||||||||||||||||
private void |
probesControlDATFilesDestinationBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
Performs the action when the probes control and dat files location browse buttion is pressed |
||||||||||||||||||
private void |
search16ex()
Performs the 16ex search |
||||||||||||||||||
private void |
search19ex()
Performs the 19ex search |
||||||||||||||||||
private void |
search19k1()
Performs the 19k1 search |
||||||||||||||||||
private void |
search19k3()
Performs the 19k3 search |
||||||||||||||||||
private void |
searchButtonActionPerformed(java.awt.event.ActionEvent evt)
Performs the action when the search buttion is pressed |
||||||||||||||||||
void |
showAboutBox()
buildIndexButtonprivate javax.swing.JButton buildIndexButton buildIndexPanelprivate javax.swing.JPanel buildIndexPanel buttonGroup1private javax.swing.ButtonGroup buttonGroup1 buttonGroup2private javax.swing.ButtonGroup buttonGroup2 buttonGroup3private javax.swing.ButtonGroup buttonGroup3 chromosomeControlDATFilesDestinationBrowseButtonprivate javax.swing.JButton chromosomeControlDATFilesDestinationBrowseButton chromosomesControlDATFilesDestinationLabelprivate javax.swing.JLabel chromosomesControlDATFilesDestinationLabel chromosomesControlDATFilesDestinationTextFieldprivate javax.swing.JTextField chromosomesControlDATFilesDestinationTextField chromosomesLocationBrowseButtonprivate javax.swing.JButton chromosomesLocationBrowseButton chromosomesLocationLabelprivate javax.swing.JLabel chromosomesLocationLabel chromosomesLocationTextFieldprivate javax.swing.JTextField chromosomesLocationTextField indexProgressInformationTextAreaprivate javax.swing.JTextArea indexProgressInformationTextArea indexProgressLabelprivate javax.swing.JLabel indexProgressLabel indexTimingLabelprivate javax.swing.JLabel indexTimingLabel jLabel1private javax.swing.JLabel jLabel1 jScrollPane1private javax.swing.JScrollPane jScrollPane1 jScrollPane2private javax.swing.JScrollPane jScrollPane2 jScrollPane3private javax.swing.JScrollPane jScrollPane3 jTabbedPane1private javax.swing.JTabbedPane jTabbedPane1 jTabbedPane2private javax.swing.JTabbedPane jTabbedPane2 locationOfProbesBrowseButtonprivate javax.swing.JButton locationOfProbesBrowseButton mainPanelprivate javax.swing.JPanel mainPanel menuBarprivate javax.swing.JMenuBar menuBar nineteenExRadioButtonprivate javax.swing.JRadioButton nineteenExRadioButton nineteenK1RadioButtonprivate javax.swing.JRadioButton nineteenK1RadioButton nineteenK3RadioButtonprivate javax.swing.JRadioButton nineteenK3RadioButton probesControlDATFilesDestinationBrowseButtonprivate javax.swing.JButton probesControlDATFilesDestinationBrowseButton probesControlDATFilesDestinationLabelprivate javax.swing.JLabel probesControlDATFilesDestinationLabel probesControlDATFilesDestinationTextFieldprivate javax.swing.JTextField probesControlDATFilesDestinationTextField probesLocationLabelprivate javax.swing.JLabel probesLocationLabel probesLocationTextFieldprivate javax.swing.JTextField probesLocationTextField probesProgressInformationTextAreaprivate javax.swing.JTextArea probesProgressInformationTextArea probesProgressLabelprivate javax.swing.JLabel probesProgressLabel progressBarprivate javax.swing.JProgressBar progressBar runSearchesPanelprivate javax.swing.JPanel runSearchesPanel searchButtonprivate javax.swing.JButton searchButton searchProgressInformationTextAreaprivate javax.swing.JTextArea searchProgressInformationTextArea searchProgressLabelprivate javax.swing.JLabel searchProgressLabel searchesAvailableLabelprivate javax.swing.JLabel searchesAvailableLabel sixteenExRadioButtonprivate javax.swing.JRadioButton sixteenExRadioButton statusAnimationLabelprivate javax.swing.JLabel statusAnimationLabel statusMessageLabelprivate javax.swing.JLabel statusMessageLabel statusPanelprivate javax.swing.JPanel statusPanel storeProbesButtonprivate javax.swing.JButton storeProbesButton storeProbesPanelprivate javax.swing.JPanel storeProbesPanel tabsprivate javax.swing.JTabbedPane tabs messageTimerprivate final javax.swing.Timer messageTimer busyIconTimerprivate final javax.swing.Timer busyIconTimer idleIconprivate final javax.swing.Icon idleIcon busyIconsprivate final javax.swing.Icon[] busyIcons busyIconIndexprivate int busyIconIndex aboutBoxprivate javax.swing.JDialog aboutBox connprivate java.sql.Connection conn genomeprivate java.lang.String genome parserprivate XMLParser parser urlprivate java.lang.String url dbNameprivate java.lang.String dbName usernameprivate java.lang.String username passwordprivate java.lang.String password
MappingMicroarrayProbestotheRatGenomeviaaPersistentIndexViewpublic MappingMicroarrayProbestotheRatGenomeviaaPersistentIndexView(SingleFrameApplication app)
showAboutBoxinitComponentsprivate void initComponents()
chromosomesLocationBrowseButtonActionPerformedprivate void chromosomesLocationBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
chromosomeControlDATFilesDestinationBrowseButtonActionPerformedprivate void chromosomeControlDATFilesDestinationBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
buildIndexButtonActionPerformedprivate void buildIndexButtonActionPerformed(java.awt.event.ActionEvent evt)
locationOfProbesBrowseButtonActionPerformedprivate void locationOfProbesBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
probesControlDATFilesDestinationBrowseButtonActionPerformedprivate void probesControlDATFilesDestinationBrowseButtonActionPerformed(java.awt.event.ActionEvent evt)
storeProbesButtonActionPerformedprivate void storeProbesButtonActionPerformed(java.awt.event.ActionEvent evt)
isCtlFilepublic static boolean isCtlFile(java.io.File f)
strippublic static java.lang.String strip(java.lang.String f)
createGeneratedVariantsTableprivate void createGeneratedVariantsTable(java.lang.String query)
loadJavaFunctionsprivate void loadJavaFunctions()
search19exprivate void search19ex()
search19k1private void search19k1()
search19k3private void search19k3()
search16exprivate void search16ex()
searchButtonActionPerformedprivate void searchButtonActionPerformed(java.awt.event.ActionEvent evt)
|